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incidence - Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Last updated

outbreak

11.46 score 57 stars 11 dependents 562 scripts 1.3k downloads

incidence2 - Compute, Handle and Plot Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted.

Last updated

6.81 score 17 stars 2 dependents 141 scripts 821 downloads

grates - Grouped Date Classes

Provides a coherent interface and implementation for creating grouped date classes.

Last updated

6.45 score 21 stars 4 dependents 18 scripts 1.1k downloads

pipeline - Orchestrate Functional Workflows

Make it easy for users to adopt a functional approach to their analysis. Pipelines are defined using a reduced subset of R and, when run, use an intelligent approach to work planning and object caching. Whilst the goal is to be "good enough" for many pieces of analysis, by encouraging a functional approach, it remains easy to move to more advanced alternatives such as targets (<doi:10.32614/CRAN.package.targets>).

Last updated

4.07 score 81 scripts

ronfig - Load Configuration Values

A simple approach to configuring R projects with different parameter values. Configurations are specified using a reduced subset of base R and parsed accordingly.

Last updated

3.85 score 220 downloads

qalytools - Tools for Analysing EQ5D Surveys

Provides helper functions to calculate various metrics relating to the analysis of EQ5D surveys.

Last updated

3.78 score 3 stars 3 scripts

tp - Tornado plot demo

Demonstrates simple construction of tornado plot.

Last updated

1.70 score 9 scripts

odin2test - For testing odin2 and shinylive

Testing odin2. Testing shinylive.

Last updated

cppopenmp

1.00 score

lintrall - Generate a lintr configuration file

Generate a lintr configuration file with all of the linters explicitly enabled and documented.

Last updated

1.00 score 1 scripts