incidence - Compute, Handle, Plot and Model Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. In addition, log-linear models can be fitted to 'incidence' objects using 'fit'. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Last updated 8 months ago

outbreak

12.06 score 58 stars 11 dependents 504 scripts 2.0k downloads

incidence2 - Compute, Handle and Plot Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted.

Last updated 20 days ago

7.67 score 17 stars 1 dependents 104 scripts 1.2k downloads

grates - Grouped Date Classes

Provides a coherent interface and implementation for creating grouped date classes.

Last updated 21 days ago

7.25 score 17 stars 2 dependents 18 scripts 1.4k downloads

i2extras - Functions to Work with 'incidence2' Objects

Provides functions to work with 'incidence2' objects, including a simplified interface for trend fitting and peak estimation. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org/).

Last updated 8 months ago

5.25 score 2 stars 22 scripts 446 downloads

ageutils - Collection of Functions for Working with Age Intervals

Provides a collection of efficient functions for working with individual ages and corresponding intervals. These include functions for conversion from an age to an interval, aggregation of ages with associated counts in to intervals and the splitting of interval counts based on specified age distributions.

Last updated 18 days ago

4.30 score 4 stars 1 scripts 412 downloads

lintrall - Generate a lintr configuration file

Generate a lintr configuration file with all of the linters explicitly enabled and documented.

Last updated 9 months ago

1.00 score 1 scripts